mRNA1
            85          95
             |          |
5'-UUU...AAUA            AAUU...AAU-3'
             GUG GUGAGGAG
             ||| ||||||||
             CAC CACUCCUC
3'-UUU...AAAC   A        AUAC...GGA-5'
             |          |
            32          21
ncRNA1

interaction energy = -11.6588 kcal/mol

mRNA1
            52     58
             |     |
5'-UUU...AUAC       UACA...AAU-3'
             UCAGUUA
             |||||:|
             AGUCAGU
3'-UUU...UUUC       UUCC...UCA-5'
             |     |
            34     28
ncRNA2

interaction energy = -2.99726 kcal/mol

mRNA1
           164        173
             |        |
5'-UUU...GACC   A      AU-3'
             GCU CUGCUA
             ||: ||||:|
             CGG GACGGU
3'-UUU...UUUC          GCUA...UCA-5'
             |        |
            24        16
ncRNA2

interaction energy = -2.91534 kcal/mol

mRNA1
           143    148
             |    |
5'-UUU...UCUU      UUAG...AAU-3'
             GGUCUU
             ||:|:|
             CCGGGA
3'-UUU...GUUU      CGGU...UCA-5'
             |    |
            25    20
ncRNA2

interaction energy = -2.67165 kcal/mol

mRNA1
           118    123
             |    |
5'-UUU...AAAG      UGUG...AAU-3'
             CUUGCU
             |:|||:
             GGACGG
3'-UUU...UCCG      UGCU...UCA-5'
             |    |
            22    17
ncRNA2

interaction energy = -0.613757 kcal/mol

mRNA2
            86          97
             |          |
5'-UGC...AAAU       C    UUUA...GGC-3'
             UGUGUGA GAGU
             ||||||| ||||
             ACACACU CUCA
3'-UUU...AACC       C    UACC...GGA-5'
             |          |
            31          20
ncRNA1

interaction energy = -8.07708 kcal/mol

mRNA2
            27     33
             |     |
5'-UGC...CGGG       AACU...GGC-3'
             GAUUUGG
             |||||||
             CUAAACC
3'-UUU...CCCG       ACAC...GGA-5'
             |     |
            38     32
ncRNA1

interaction energy = -4.60471 kcal/mol

mRNA2
           161            172
             |            |
5'-UGC...AUUU    CG        GGC-3'
             UCAA    UUUGCU
             ||||    ::|||:
             AGUU    GGACGG
3'-UUU...AGUC    UCCG      UGCU...UCA-5'
             |            |
            30            17
ncRNA2

interaction energy = -1.67539 kcal/mol